CLC GENOMICS WORKBENCH NCSU PDF
CLC GENOMICS WORKBENCH NCSU UPGRADE
CLC GENOMICS WORKBENCH NCSU LICENSE

Data and sample-metadata management is included. All analytics for microbial genomics and metagenomics come fully integrated into one scalable and enterprise-ready solution. Striped bass and other fish genomes provide powerful resources for selective breeding of sustainable aquaculture species, as well as enhance studies of fish biology and evolution. QIAGEN CLC Genomics Workbench Premium provides integrated analytics that deliver research continuity. Ab-initio and evidence-based gene predictions performed using the MAKER Annotation Pipeline identified 27,485 coding genes for striped bass and these data are hosted at Analysis of Benchmarking Universal Single-Copy Orthologs (BUSCO) indicates that 90.1% of these gene are present in the final assembly and the low number of assembly scaffolds (629), of which 21 contain most of the genome sequence (L90 = 21 scaffolds) is consistent with a haploid chromosome number of 24 for striped bass. Compared to the initial 569 Mb Illumina short-read assembly, the final 598 Mb striped bass genome assembly reduced assembly scaffold number by 75-fold and increased scaffold N50 by 1284-fold. The final assembly was then refined by an additional 1.6 Gb of Pacific Biosciences sequence (2.8x coverage) using PBJelly in a cost-effective whole genome shotgun approach.

CLC GENOMICS WORKBENCH NCSU PDF

This user manual can also be found in pdf format: UserManual.pdf This software is for research purposes only.

CLC GENOMICS WORKBENCH NCSU UPGRADE

Includes maintenance, upgrade and service.

CLC GENOMICS WORKBENCH NCSU LICENSE

ID: 832494 1 year subscription for a static license to use the software on a single computer. This product is not intended for the diagnosis, prevention, or treatment of a disease. The Illumina short-read assembly was then scaffolded using Chicago® and Dovetail™ Hi-C + HiRise™ technology. Welcome to CLC Genomics Workbench - a software package supporting your daily bioinformatics work. The QIAGEN CLC Workbench Modules is intended for molecular biology applications. These short-reads were used to generate a CLC Genomics Workbench (version 5.5) de novo assembly having greater than 66x coverage of the striped bass genome. Over 573 million short-reads were produced, with 106 million reads generated as paired-end sequence (average length of all reads was 67.8 bp). A total of 38 Gb of Illumina short-read sequence was generated using both single read and paired-end runs of varying lengths, comprising over 21 lanes on an Illumina GAIIx platform. We report the striped bass genome assembly, which was completed using a combinatorial approach of Illumina and Pacific Biosciences sequencing and Chicago® and Dovetail™ Hi-C + HiRise™ scaffolding (Table 1). Technical Abstract: The striped bass (Morone saxatilis) is a perciform fish of recreational and commercial importance. Aquaculture 2019, March 7-11, 2019, New Orleans, Louisana. The striped bass Morone saxatilis genome sequence assembly. Submitted to: Aquaculture America ConferenceĬitation: Anderson, L.K., Baltzegar, D.A., Fuller, S.A., Abernathy, J.W., Reading, B.J.

Clc genomics workbench ncsu